Fixed in build doesn't work for feature branches with git

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We are using feature branches that I believe were introduced into TeamCity in 8.x and they would great for us. We are having a problem with youtrack integrating with these feature branches however. It looks to me like youtrack only looks for changes on the master branch when checking for fixed in build. The only solution I can think of right now is to create 3 more projects in teamcity and configure them to point at our prod, qa and dev builds explicitly. Is there a way to get youtrack to recognize all the feature branches in teamcity?